Jatropha Genome Database

JcCB0384321.10 (JcS_200318.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0384321
Scaffold:
JcS_200318 JcCB0820891(+) =JcCB0384321(+) =JcCB0799991(+) =JcPR01CW0T2(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T0A0_RICCO 224 76.0 80.1 (tr|B9T0A0) 40S ribosomal protein S6, putative OS=Ricinus communis GN=RCOM_0767670 PE=4 SV=1
Arabidopsis_pep AT5G10360.1 213 72.6 77.4 | Symbols: EMB3010 | EMB3010 (embryo defective 3010); structural constituent of ribosome | chr5:3258734-3260142 REVERSE
soybean_pep Glyma18g26190.1 219 74.0 78.8  
Medicago_pep IMGA|Medtr2g017530.1 216 82.7 84.3 Ribosomal protein S6e chr02_pseudomolecule_IMGAG_V3 4385254-4388559 E EGN_Mt090430 20090702
grape_pep GSVIVT01015776001 222 85.0 85.8  
castor_bean_cds 29806.m000942 436 90.4 90.4 40S ribosomal protein S6, putative
castor_bean_pep 29772.m000314 224 76.0 80.1 40S ribosomal protein S6, putative
JAT_13201ests gi|268523830|gb|FM890516.1|FM890516 636 100.0 100.0 FM890516 Jatropha curcas embryo 56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000187, mRNA sequence
KJC_r1 KJC_c00137 755 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0384321.10 length: 176 aa.
IPR001377 Ribosomal protein S6e
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPanther PTHR11502 40S 2.3e-85 1-127
HMMPfam PF01092 Ribosomal_S6e 7.6e-36 1-85
IPR018282 Ribosomal protein S6e, conserved site
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
PatternScan PS00578 RIBOSOMAL_S6E NA 8-19
no_ID  
HMMPanther PTHR11502:SF1 40S 2.3e-85 1-127
Seg seg seg NA 41-57