Jatropha Genome Database

JcCB0379211.10 (JcS_100291.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0379211
Scaffold:
JcS_100291 JcCB0308331(+) =JcCA0310551(+) =JcCB0111501(+) =JcCB0379211(-) =JcCD0126540(+) =JcCB0011311(+) =JcCB0234411(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TQ06_VITVI 363 98.3 98.9 (tr|D7TQ06) Whole genome shotgun sequence of line PN40024, scaffold_63.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031955001 PE=4 SV=1
Arabidopsis_pep AT4G34450.1 330 87.7 94.4 | Symbols: | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD
soybean_pep Glyma11g12610.2 355 95.5 98.3  
Medicago_pep IMGA|Medtr4g095440.1 349 94.4 98.3 Adaptin, N-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; ; chr04_pseudomolecule_IMGAG_V3 19859254-19866796 E EGN_Mt090430 20090702
grape_pep GSVIVT01031955001 363 98.3 98.9  
castor_bean_cds 30190.m010889 718 91.8 91.8 coatomer gamma subunit, putative
castor_bean_pep 30190.m010889 362 98.3 98.9 coatomer gamma subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00851 1066 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0379211.10 length: 179 aa.
IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
HMMPfam PF01602 Adaptin_N 7.5e-26 1-178
IPR011989 Armadillo-like helical
Molecular Function GO:0005488 binding    
Gene3D G3DSA:1.25.10.10 no description 6e-24 1-179
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 1.6e-16 1-179
no_ID  
HMMPanther PTHR10261 COATOMER 4.5e-96 1-179