Jatropha Genome Database

JcCB0372261.10 (JcS_101792.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0372261
Scaffold:
JcS_101792 JcCA0310221(-) =JcCA0309861(+) =JcCB0372261(+) =JcCA0154771(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl Q5XV31_ARATH 109 38.4 54.1 (tr|Q5XV31) Putative uncharacterized protein OS=Arabidopsis thaliana GN=At5g27230 PE=2 SV=1
Arabidopsis_pep AT5G27230.1 109 38.4 54.1 | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 7968 Blast hits to 5791 proteins in 512 species: Archae - 158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants - 1028; Viruses - 76; Other Eukaryotes - 2727 (source: NCBI BLink). | chr5:9584255-9587838 FORWARD
soybean_pep Glyma20g28440.1 82.4 28.1 51.5  
Medicago_pep IMGA|Medtr2g010450.1 79.0 31.7 55.6 Frigida-like chr02_pseudomolecule_IMGAG_V3 2539346-2543148 E EGN_Mt090430 20090702
grape_pep GSVIVT01021974001 86.7 36.1 58.5  
castor_bean_cds --No_Hits--        
castor_bean_pep 30128.m008678 103 41.0 57.6 Protein FRIGIDA, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0372261.10 length: 228 aa.
IPR012474 Frigida-like
method AccNumber shortName E-value location
HMMPfam PF07899 Frigida 1.5e-41 35-211
no_ID  
Coil coil coiled-coil NA 148-169
Seg seg seg NA 83-94