Jatropha Genome Database

JcCB0365841.10 (JcS_100289.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0365841
Scaffold:
JcS_100289 JcCB0304051(+) =JcCB0463411(+) =JcCB0280981(-) =JcCB0167931(+) =JcCD0160234(-) =JcCB0365841(+) =JcCB0269831(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RP67_RICCO 198 96.8 98.9 (tr|B9RP67) Cellulose synthase A catalytic subunit 6 [UDP-forming], putative OS=Ricinus communis GN=RCOM_0924530 PE=4 SV=1
Arabidopsis_pep AT4G32410.1 178 83.9 92.5 | Symbols: CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups | chr4:15641009-15646388 REVERSE
soybean_pep Glyma04g07220.1 179 86.2 93.6  
Medicago_pep IMGA|Medtr3g136720.1 162 77.7 88.3 Zinc finger, RING-type; Cellulose synthase chr03_pseudomolecule_IMGAG_V3 34568485-34575037 E EGN_Mt090430 20090702
grape_pep GSVIVT01035830001 185 88.2 95.7  
castor_bean_cds 29848.m004649 321 89.6 89.6 Cellulose synthase A catalytic subunit 6 [UDP-forming], putative
castor_bean_pep 29848.m004649 198 96.8 98.9 Cellulose synthase A catalytic subunit 6 [UDP-forming], putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c03660 551 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0365841.10 length: 115 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.565 39-85
no_ID  
Gene3D G3DSA:3.30.40.10 no description 1.8e-29 21-93
HMMPanther PTHR13301 X-BOX 1.6e-52 1-91
HMMPanther PTHR13301:SF1 TGACG-MOTIF-BINDING 1.6e-52 1-91
superfamily SSF57850 RING/U-box 7.9e-13 26-107