Jatropha Genome Database

JcCB0365731.10 (JcS_101589.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0365731
Scaffold:
JcS_101589 JcCA0154411(+) =JcCB0365731(+) =JcCB0733091(-) =JcCB0303641(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SV86_RICCO 96.3 95.9 95.9 (tr|B9SV86) Gaba(A) receptor-associated protein, putative OS=Ricinus communis GN=RCOM_1302610 PE=3 SV=1
Arabidopsis_pep AT1G62040.1 93.6 89.8 95.9 | Symbols: ATG8C | ATG8C (autophagy 8c); microtubule binding | chr1:22933216-22934253 FORWARD
soybean_pep Glyma17g01650.1 93.2 91.8 95.9  
Medicago_pep IMGA|Medtr8g105940.1 80.1 81.6 89.8 Light chain 3 (LC3) chr08_pseudomolecule_IMGAG_V3 23520062-23522856 E EGN_Mt090430 20090702
grape_pep GSVIVT01037666001 92.8 91.8 95.9  
castor_bean_cds 30064.m000481 198 91.9 91.9 gaba(A) receptor-associated protein, putative
castor_bean_pep 30064.m000482 96.3 95.9 95.9 gaba(A) receptor-associated protein, putative
JAT_13201ests gi|237680382|gb|GO246594.1|GO246594 212 92.7 92.7 JcrME_RL0138 Expressed sequence tags from Jatropha curcas root cDNA library Jatropha curcas cDNA, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0365731.10 length: 53 aa.
IPR004241 Light chain 3 (LC3)
method AccNumber shortName E-value location
HMMPanther PTHR10969 MICROTUBULE-ASSOCIATED 1.4e-24 8-52
HMMPfam PF02991 MAP1_LC3 1.8e-12 17-52
no_ID  
Gene3D G3DSA:3.10.20.90 no description 2.4e-11 5-52
HMMPanther PTHR10969:SF4 GABA(A) 1.4e-24 8-52
superfamily SSF54236 Ubiquitin-like 3.4e-13 5-52