Jatropha Genome Database

JcCB0360521.10 (JcS_100024.160)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0360521
Scaffold:
JcS_100024 JcCA0019701(+) =JcCD0071482(-) =JcCD0058471(-) =JcCB0387971(+) =JcCB0022671(-) =JcCA0224481(+) =JcCA0302271(-) =JcCB0394631(+) =JcCA0299231(+) =JcCB0360521(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9S3Y7_RICCO 614 82.7 86.8 (tr|B9S3Y7) Stromal antigen, putative OS=Ricinus communis GN=RCOM_0557120 PE=4 SV=1
Arabidopsis_pep AT2G47980.1 566 74.2 83.0 | Symbols: SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID COHESION PROTEIN 3); binding | chr2:19631423-19636795 FORWARD
soybean_pep Glyma03g36570.1 537 72.3 80.0  
Medicago_pep IMGA|AC235488_7.1 518 72.3 80.5 HMG-I and HMG-Y, DNA-binding AC235488.1 16550-28206 E EGN_Mt090430 20090702
grape_pep GSVIVT01011020001 593 77.2 83.7  
castor_bean_cds 29647.m002047 1263 89.6 89.6 stromal antigen, putative
castor_bean_pep 29647.m002047 614 82.7 86.8 stromal antigen, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0360521.10 length: 380 aa.
IPR013721 STAG
method AccNumber shortName E-value location
HMMPfam PF08514 STAG 3.1e-40 38-150
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 4.9e-11 149-319
IPR020839 Stromalin conservative domain
ProfileScan PS51425 SCD 32.888 172-257
no_ID  
HMMPanther PTHR11199 STROMAL 6.6e-132 4-369
Seg seg seg NA 15-33
281-298