Jatropha Genome Database

JcCB0352111.10 (JcS_100808.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0352111
Scaffold:
JcS_100808 JcCA0149281(-) =JcCB0352111(+) =JcCA0122171(+) =JcCA0109511(+) =JcCB0078031(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T018_RICCO 118 98.3 98.3 (tr|B9T018) Cofactor required for Sp1 transcriptional activation subunit, putative OS=Ricinus communis GN=RCOM_0036740 PE=4 SV=1
Arabidopsis_pep AT5G03220.1 107 88.3 95.0 | Symbols: | transcriptional co-activator-related | chr5:767617-768584 REVERSE
soybean_pep Glyma08g22810.1 107 88.1 94.9  
Medicago_pep --No_Hits--        
grape_pep GSVIVT01033427001 113 93.3 98.3  
castor_bean_cds 27553.m000321 180 87.7 87.7 Cofactor required for Sp1 transcriptional activation subunit, putative
castor_bean_pep 27553.m000321 118 98.3 98.3 Cofactor required for Sp1 transcriptional activation subunit, putative
JAT_13201ests gi|268518704|gb|FM888947.1|FM888947 208 98.2 98.2 FM888947 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002474, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0352111.10 length: 62 aa.
IPR009244 Mediator complex, subunit Med7
method AccNumber shortName E-value location
Biological Process GO:0006357 regulation of transcription from RNA polymerase II promoter    
Molecular Function GO:0016455 RNA polymerase II transcription mediator activity    
Cellular Component GO:0016592 mediator complex    
HMMPanther PTHR21428 FAMILY 3.4e-39 1-59
HMMPfam PF05983 Med7 5.7e-16 1-50
no_ID  
Coil coil coiled-coil NA 29-57
HMMPanther PTHR21428:SF6 SUBFAMILY 3.4e-39 1-59