Jatropha Genome Database

JcCB0308731.10 (JcS_100015.40)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0308731
Scaffold:
JcS_100015 JcCB0254931(+) =JcCA0293441(+) =JcCB0308731(-) =JcCA0309051(+) =JcCB0987371(-) =JcCB0356581(-) =JcCB0647611(-) =JcCA0314681(+) =JcCB0063711(+) =JcCB0588921(+) =JcCB0256761(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SEQ2_RICCO 241 44.3 52.0 (tr|B9SEQ2) Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0222280 PE=4 SV=1
Arabidopsis_pep AT2G42520.1 205 52.3 61.5 | Symbols: | DEAD box RNA helicase, putative | chr2:17705382-17708744 FORWARD
soybean_pep Glyma02g26630.2 213 54.3 64.4  
Medicago_pep IMGA|Medtr3g105540.1 203 55.6 64.3 ATP-requiring DNA helicase RecQ; ; chr03_pseudomolecule_IMGAG_V3 26430719-26424901 E EGN_Mt090430 20090702
grape_pep GSVIVT01015515001 232 58.5 65.0  
castor_bean_cds 28320.m001110 145 86.3 86.3 dead box ATP-dependent RNA helicase, putative
castor_bean_pep 28320.m001110 241 44.3 52.0 dead box ATP-dependent RNA helicase, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0308731.10 length: 312 aa.
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.7e-15 171-244
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 9.594 147-175
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
ProfileScan PS51192 HELICASE_ATP_BIND_1 9.773 178-312
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.1e-26 134-264
HMMPanther PTHR10967 DEAD 5.5e-66 121-312
HMMPanther PTHR10967:SF56 DEAD-BOX 5.5e-66 121-312
Seg seg seg NA 30-44
51-78
superfamily SSF52540 P-loop 2.8e-22 147-312