Jatropha Genome Database

JcCB0303641.10 (JcS_101589.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0303641
Scaffold:
JcS_101589 JcCA0154411(+) =JcCB0365731(+) =JcCB0733091(-) =JcCB0303641(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SHV5_RICCO 180 83.2 93.7 (tr|B9SHV5) R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0622120 PE=4 SV=1
Arabidopsis_pep AT2G32460.2 172 82.2 93.3 | Symbols: MYB101, ATMYB101, ATM1 | MYB101; DNA binding / transcription factor | chr2:13782419-13784359 REVERSE
soybean_pep Glyma15g35860.1 175 83.5 92.3  
Medicago_pep IMGA|Medtr3g068960.1 176 85.6 94.4 Homeodomain-related; chr03_pseudomolecule_IMGAG_V3 16390027-16386600 E EGN_Mt090430 20090702
grape_pep GSVIVT01012447001 177 85.7 94.5  
castor_bean_cds 30064.m000484 210 85.4 85.4 r2r3-myb transcription factor, putative
castor_bean_pep 29686.m000890 180 83.2 93.7 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0303641.10 length: 149 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 0.28 61-111
114-149
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 1.4e-23 62-132
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 8.2e-08 60-112
116-149
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 9.2e-09 62-109
115-149
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 9.4e-66 60-149
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 15.622 57-113
114-149
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 9.4e-66 60-149
Seg seg seg NA 5-37
40-53