Jatropha Genome Database

JcCB0302981.20  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0302981
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HEA8_POPTR 147 51.9 56.7 (tr|B9HEA8) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_562363 PE=4 SV=1
Arabidopsis_pep AT5G64390.1 72.4 39.7 49.6 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding / nucleic acid binding | chr5:25743442-25747380 FORWARD
soybean_pep Glyma13g32960.3 129 44.5 56.1  
Medicago_pep IMGA|Medtr2g009690.1 132 45.1 56.0 KH, type 1 chr02_pseudomolecule_IMGAG_V3 2180637-2187804 E EGN_Mt090430 20090702
grape_pep --No_Hits--        
castor_bean_cds 29838.m001726 65.9 91.8 91.8 Poly(rC)-binding protein, putative
castor_bean_pep 29838.m001726 144 50.0 56.2 Poly(rC)-binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c10175 1025 99.8 99.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0302981.20 length: 178 aa.
IPR004087 K Homology
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 no description 3e-09 50-137
IPR004088 K Homology, type 1
Molecular Function GO:0003723 RNA binding    
ProfileScan PS50084 KH_TYPE_1 13.334 51-132
IPR018111 K Homology, type 1, subgroup
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 4.9e-13 54-105
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 8.5e-09 39-112
HMMPanther PTHR10288 RNA-BINDING 1e-25 61-173
HMMPanther PTHR10288:SF55 RNA-BINDING 1e-25 61-173
Seg seg seg NA 39-49
63-75
98-114
superfamily SSF54791 Eukaryotic 5.1e-13 39-110