Jatropha Genome Database

JcCB0297231.10 (JcS_102282.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0297231
Scaffold:
JcS_102282 JcCB0388321(-) =JcCB0680381(-) =JcCB0297231(-) =JcCB0248161(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SQP6_RICCO 285 63.5 71.4 (tr|B9SQP6) R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0838620 PE=4 SV=1
Arabidopsis_pep AT3G50060.1 177 76.2 84.8 | Symbols: MYB77 | MYB77; DNA binding / transcription factor | chr3:18558146-18559051 REVERSE
soybean_pep Glyma02g43280.1 209 47.7 59.3  
Medicago_pep IMGA|Medtr5g090370.1 192 41.1 52.6 Homeodomain-related; chr05_pseudomolecule_IMGAG_V3 35270572-35273202 H EGN_Mt090430 20090702
grape_pep GSVIVT01009424001 182 44.8 54.4  
castor_bean_cds 29814.m000736 244 85.3 85.3 r2r3-myb transcription factor, putative
castor_bean_pep 29814.m000736 285 63.5 71.4 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00519 54.0 89.4 89.4  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0297231.10 length: 260 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 9.4e-15 12-61
64-112
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 2.3e-09 13-81
84-113
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 3.6e-15 11-62
66-114
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 5.2e-15 13-58
67-109
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 1.3e-82 9-252
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 21.985 8-63
64-114
no_ID  
HMMPanther PTHR10641:SF34 R2R3-MYB 1.3e-82 9-252
Seg seg seg NA 115-125
186-200
210-217