Jatropha Genome Database

JcCB0293281.10 (JcS_100333.90)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0293281
Scaffold:
JcS_100333 JcCB0600521(-) =JcCA0299871(-) =JcCB0022161(-) =JcCB0207251(+) =JcCA0147341(-) =JcCB0238831(+) =JcCB0293281(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R9U2_RICCO 1121 80.3 89.8 (tr|B9R9U2) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1500660 PE=4 SV=1
Arabidopsis_pep AT5G64320.1 834 58.7 77.3 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:25723247-25725439 REVERSE
soybean_pep Glyma02g45110.1 958 68.7 83.7  
Medicago_pep IMGA|Medtr5g097270.1 942 68.0 81.3 Pentatricopeptide repeat chr05_pseudomolecule_IMGAG_V3 38774986-38777193 E EGN_Mt090430 20090702
grape_pep GSVIVT01008016001 365 31.8 54.2  
castor_bean_cds 30147.m014237 1612 85.1 85.1 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30147.m014237 1121 80.3 89.8 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0293281.10 length: 689 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 1.2e-05 143-172
177-207
212-242
248-277
283-306
313-336
349-379
384-414
421-449
454-484
489-518
524-554
560-589
594-624
629-653
HMMTigr TIGR00756 PPR: 7e-08 71-105
106-141
142-176
177-211
212-246
247-281
282-312
313-348
349-383
384-418
419-453
454-488
489-523
524-558
559-593
594-628
629-663
ProfileScan PS51375 PPR 11.235 69-103
140-174
175-209
210-244
245-279
311-346
280-310
347-381
382-416
417-451
452-486
487-521
522-556
557-591
592-626
627-661
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 3.4e-177 128-670
superfamily SSF48452 TPR-like 9.5e-08 336-679
141-335