Jatropha Genome Database

JcCB0292291.10 (JcS_100088.110)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0292291
Scaffold:
JcS_100088 JcCB0551591(-) =JcCB0087221(-) =JcCB0294291(-) =JcCA0076121(+) =JcCA0317171(-) =JcCB0615491(-) =JcCB0292291(-) =JcCB0102141(+) =JcPR04ISYPF(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RIG6_RICCO 532 77.3 84.5 (tr|B9RIG6) Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1578820 PE=4 SV=1
Arabidopsis_pep AT5G12400.1 364 54.0 68.3 | Symbols: | PHD finger transcription factor, putative | chr5:4013813-4020909 FORWARD
soybean_pep Glyma12g02470.1 417 64.3 75.2  
Medicago_pep IMGA|Medtr4g103750.1 384 60.4 73.3 Immunoglobulin/major histocompatibility complex; DDT; Zinc finger, FYVE/PHD-type chr04_pseudomolecule_IMGAG_V3 22426782-22432803 E EGN_Mt090430 20090702
grape_pep GSVIVT01037231001 445 67.4 78.9  
castor_bean_cds 30169.m006480 787 85.3 85.3 hypothetical protein
castor_bean_pep 30169.m006480 532 77.3 84.5 hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c05771 948 99.0 99.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0292291.10 length: 436 aa.
IPR001965 Zinc finger, PHD-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 no description 2e-11 241-284
IPR004022 DDT domain
HMMPfam PF02791 DDT 5.3e-15 45-102
IPR011011 Zinc finger, FYVE/PHD-type
Molecular Function GO:0008270 zinc ion binding    
superfamily SSF57903 FYVE/PHD 3.6e-16 233-302
IPR018500 DDT domain, subgroup
HMMSmart SM00571 no description 1.9e-08 43-103
IPR018501 DDT domain superfamily
ProfileScan PS50827 DDT 15.486 43-103
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 242-283
IPR019787 Zinc finger, PHD-finger
HMMPfam PF00628 PHD 1.9e-09 242-284
ProfileScan PS50016 ZF_PHD_2 9.917 239-286
no_ID  
Gene3D G3DSA:3.30.40.10 no description 7.4e-14 215-302
HMMPanther PTHR13712 RING 3.1e-08 163-283
HMMPanther PTHR13712:SF53 RING 3.1e-08 163-283
Seg seg seg NA 58-73