Jatropha Genome Database

JcCB0289031.10 (JcS_100141.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0289031
Scaffold:
JcS_100141 JcCB0190911(+) =JcCB0839271(+) =JcCA0258831(-) =JcCA0105841(-) =JcCA0308991(-) =JcCA0313811(+) =JcCB0289031(-) =JcCB0432051(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S0S6_RICCO 228 88.8 98.3 (tr|B9S0S6) U3 small nucleolar RNA-interacting protein, putative OS=Ricinus communis GN=RCOM_1223140 PE=4 SV=1
Arabidopsis_pep AT4G05410.1 182 71.6 82.8 | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:2743229-2745521 REVERSE
soybean_pep Glyma09g02690.1 218 81.1 91.8  
Medicago_pep IMGA|AC234842_3.1 209 75.4 90.2 WD40 repeat AC234842.1 17142-14392 E EGN_Mt090430 20090702
grape_pep GSVIVT01021618001 213 80.3 91.0  
castor_bean_cds 30009.m000840 404 90.4 90.4 U3 small nucleolar RNA-interacting protein, putative
castor_bean_pep 30009.m000840 228 88.8 98.3 U3 small nucleolar RNA-interacting protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0289031.10 length: 132 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
HMMSmart SM00320 no description 0.91 1-30
33-72
75-113
IPR011046 WD40 repeat-like-containing domain
superfamily SSF50978 WD40 1.9e-28 1-115
IPR015943 WD40/YVTN repeat-like-containing domain
Gene3D G3DSA:2.130.10.10 no description 2.2e-26 1-104
IPR017986 WD40-repeat-containing domain
ProfileScan PS50294 WD_REPEATS_REGION 26.946 1-122
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 17-31
59-73
IPR019781 WD40 repeat, subgroup
HMMPfam PF00400 WD40 0.28 1-30
35-72
80-112
IPR019782 WD40 repeat 2
ProfileScan PS50082 WD_REPEATS_2 14.285 1-39
40-81
IPR020472 G-protein beta WD-40 repeat, region
FPrintScan PR00320 GPROTEINBRPT 6.5e-05 17-31
59-73
100-114
no_ID  
HMMPanther PTHR19865 U3 1.7e-53 1-114