Jatropha Genome Database

JcCB0272781.10 (JcS_104933.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0272781
Scaffold:
JcS_104933 JcCB0475051(-) =JcCB0080131(-) =JcCB0272781(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B2CZJ1_CAPAN 227 52.5 64.3 (tr|B2CZJ1) Myb-related transcription factor OS=Capsicum annuum PE=2 SV=1
Arabidopsis_pep AT3G23250.1 223 60.2 70.5 | Symbols: MYB15, ATY19, ATMYB15 | MYB15 (MYB DOMAIN PROTEIN 15); DNA binding / transcription factor | chr3:8309492-8310624 FORWARD
soybean_pep Glyma02g00820.1 226 84.5 92.2  
Medicago_pep IMGA|Medtr1g042810.1 213 81.0 88.8 Homeodomain-like; chr01_pseudomolecule_IMGAG_V3 9940923-9942895 F EGN_Mt090430 20090702
grape_pep GSVIVT01023531001 211 69.0 76.8  
castor_bean_cds 29680.m001686 295 90.8 90.8 r2r3-myb transcription factor, putative
castor_bean_pep 29680.m001686 202 50.5 60.4 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0272781.10 length: 212 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 1.4e-16 13-63
66-114
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 8.7e-10 14-83
86-115
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 1.7e-17 12-64
68-116
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 1.9e-15 14-61
67-112
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 1.9e-89 5-115
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 17.730 62-116
9-61
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 1.9e-89 5-115
Seg seg seg NA 122-137