Jatropha Genome Database

JcCB0271581.10 (JcS_100128.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0271581
Scaffold:
JcS_100128 JcCA0297631(+) =JcCB0271581(-) =JcCD0083751(+) =JcCA0127751(-) =JcCB0360101(-) =JcCA0140861(+) =JcCA0312601(+) =JcCB0744981(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RX26_RICCO 412 71.7 78.1 (tr|B9RX26) DNA binding protein, putative OS=Ricinus communis GN=RCOM_0816670 PE=4 SV=1
Arabidopsis_pep AT4G37850.1 201 55.6 72.4 | Symbols: | basic helix-loop-helix (bHLH) family protein | chr4:17796362-17797647 REVERSE
soybean_pep Glyma13g32650.2 319 55.8 67.8  
Medicago_pep IMGA|Medtr2g010480.1 283 49.4 64.4 Helix-loop-helix DNA-binding chr02_pseudomolecule_IMGAG_V3 2554546-2556774 E EGN_Mt090430 20090702
grape_pep GSVIVT01036959001 355 59.1 69.0  
castor_bean_cds 29804.m001498 577 86.9 86.9 DNA binding protein, putative
castor_bean_pep 29804.m001498 412 71.7 78.1 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0271581.10 length: 329 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF00010 HLH 2.4e-10 150-197
HMMSmart SM00353 no description 1.2e-14 153-202
ProfileScan PS50888 HLH 12.402 137-197
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:4.10.280.10 no description 3.1e-09 143-224
superfamily SSF47459 HLH, 6.1e-15 137-214
no_ID  
Coil coil coiled-coil NA 186-214
HMMPanther PTHR12565 STEROL 3.9e-07 156-198
HMMPanther PTHR12565:SF7 CENTROMERE-BINDING 3.9e-07 156-198
Seg seg seg NA 58-73
227-238