Jatropha Genome Database

JcCB0269831.10 (JcS_100289.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0269831
Scaffold:
JcS_100289 JcCB0304051(+) =JcCB0463411(+) =JcCB0280981(-) =JcCB0167931(+) =JcCD0160234(-) =JcCB0365841(+) =JcCB0269831(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RP68_RICCO 181 64.2 66.2 (tr|B9RP68) Transcription factor hy5, putative OS=Ricinus communis GN=RCOM_0924540 PE=3 SV=1
Arabidopsis_pep AT5G11260.1 137 51.7 58.3 | Symbols: HY5, TED 5 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor | chr5:3593583-3594800 REVERSE
soybean_pep Glyma08g41450.1 128 62.2 65.5  
Medicago_pep IMGA|AC146793_14.1 67.8 37.7 46.9 bZIP transcription factor, bZIP_1 AC146793.7 78592-81181 E EGN_Mt090430 20090702
grape_pep GSVIVT01035829001 160 60.5 63.8  
castor_bean_cds 29848.m004650 486 88.9 88.9 transcription factor hy5, putative
castor_bean_pep 29848.m004650 181 64.2 66.2 transcription factor hy5, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0269831.10 length: 178 aa.
IPR001630 cAMP response element binding (CREB) protein
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00041 LEUZIPPRCREB 2.2e-06 11-26
86-102
104-124
124-141
IPR004827 Basic-leucine zipper (bZIP) transcription factor
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMSmart SM00338 no description 9.9e-15 87-151
PatternScan PS00036 BZIP_BASIC NA 94-109
ProfileScan PS50217 BZIP 12.737 89-146
IPR011616 bZIP transcription factor, bZIP-1
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
HMMPfam PF00170 bZIP_1 6.7e-14 87-146
no_ID  
Coil coil coiled-coil NA 86-149
Gene3D G3DSA:1.20.5.170 no description 1.5e-05 91-152
HMMPanther PTHR13301 X-BOX 1.8e-69 33-151
HMMPanther PTHR13301:SF1 TGACG-MOTIF-BINDING 1.8e-69 33-151
Seg seg seg NA 7-24
90-100
122-135