Jatropha Genome Database

JcCB0242111.10 (JcS_101371.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0242111
Scaffold:
JcS_101371 JcCB0764201(+) =JcCB0087171(-) =JcCA0301531(+) =JcCB0242111(+) =JcCB0335421(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RA76_RICCO 322 82.7 84.3 (tr|B9RA76) Transcription factor ICE1, putative OS=Ricinus communis GN=RCOM_1504040 PE=4 SV=1
Arabidopsis_pep AT3G26744.4 284 70.7 80.6 | Symbols: ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor | chr3:9832953-9834790 REVERSE
soybean_pep Glyma06g17330.1 292 79.6 84.3  
Medicago_pep IMGA|Medtr7g096910.1 257 72.4 78.6 Helix-loop-helix DNA-binding chr07_pseudomolecule_IMGAG_V3 21802125-21805120 E EGN_Mt090430 20090702
grape_pep GSVIVT01008637001 286 79.1 82.7  
castor_bean_cds 30147.m014419 769 89.4 89.4 Transcription factor ICE1, putative
castor_bean_pep 30147.m014419 322 82.7 84.3 Transcription factor ICE1, putative
JAT_13201ests gi|268522860|gb|FM896303.1|FM896303 117 83.6 83.6 FM896303 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003495, mRNA sequence
KJC_r1 KJC_c01725 65.9 81.0 81.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0242111.10 length: 228 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF00010 HLH 7.2e-10 44-86
HMMSmart SM00353 no description 6.2e-14 43-92
ProfileScan PS50888 HLH 12.990 31-87
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:4.10.280.10 no description 2e-05 33-98
superfamily SSF47459 HLH, 2.3e-16 27-104
no_ID  
Coil coil coiled-coil NA 76-101
Seg seg seg NA 11-37
99-111
143-155