Jatropha Genome Database

JcCB0231591.10 (JcS_100623.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0231591
Scaffold:
JcS_100623 JcCB0477071(+) =JcCB0231591(+) =JcCA0068901(+) =JcCA0307381(+) =JcCA0312531(+) =JcCB0027381(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RNV9_RICCO 157 53.6 62.7 (tr|B9RNV9) DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_0920920 PE=3 SV=1
Arabidopsis_pep AT3G23780.1 137 47.6 60.2 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase | chr3:8567971-8573819 REVERSE
soybean_pep Glyma06g06480.1 144 53.3 59.9  
Medicago_pep IMGA|Medtr3g138340.1 142 52.1 59.3 RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit chr03_pseudomolecule_IMGAG_V3 35357572-35364917 E EGN_Mt090430 20090702
grape_pep GSVIVT01035963001 155 53.6 64.5  
castor_bean_cds 29848.m004540 335 84.4 84.4 DNA-directed RNA polymerase subunit, putative
castor_bean_pep 29848.m004540 157 53.6 62.7 DNA-directed RNA polymerase subunit, putative
JAT_13201ests gi|262090775|gb|GT229133.1|GT229133 178 94.7 94.7 JC698 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL16SE.E09.scf 5', mRNA sequence
KJC_r1 KJC_c08652 91.7 87.8 87.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0231591.10 length: 154 aa.
IPR007641 RNA polymerase Rpb2, domain 7
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006350 transcription    
HMMPfam PF04560 RNA_pol_Rpb2_7 4.2e-07 102-151
IPR015712 DNA-directed RNA polymerase, subunit 2
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006350 transcription    
Molecular Function GO:0032549 ribonucleoside binding    
HMMPanther PTHR20856 DNA-DIRECTED 1.5e-33 1-152
no_ID  
HMMPanther PTHR20856:SF6 DNA-DIRECTED 1.5e-33 1-152
superfamily SSF64484 beta 2.7e-13 1-152