Jatropha Genome Database

JcCB0190531.10 (JcS_102597.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0190531
Scaffold:
JcS_102597 JcCB0742921(-) =JcCA0296621(+) =JcCB0190531(-) =JcCA0315581(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T3X9_RICCO 220 95.4 98.2 (tr|B9T3X9) RNA polymerase II transcription factor B subunit, putative OS=Ricinus communis GN=RCOM_0417820 PE=4 SV=1
Arabidopsis_pep AT1G18340.1 192 82.6 89.9 | Symbols: | basal transcription factor complex subunit-related | chr1:6311612-6313734 REVERSE
soybean_pep Glyma04g42940.1 185 79.8 89.0  
Medicago_pep IMGA|Medtr3g097520.1 187 78.0 90.8 Transcription factor Tfb4 chr03_pseudomolecule_IMGAG_V3 23357405-23363002 E EGN_Mt090430 20090702
grape_pep GSVIVT01008884001 203 88.1 94.5  
castor_bean_cds 29308.m000180 371 89.1 89.1 RNA polymerase II transcription factor B subunit, putative
castor_bean_pep 29308.m000180 220 95.4 98.2 RNA polymerase II transcription factor B subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0190531.10 length: 165 aa.
IPR004600 Transcription factor Tfb4
method AccNumber shortName E-value location
Cellular Component GO:0000439 core TFIIH complex    
Biological Process GO:0006281 DNA repair    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016251 general RNA polymerase II transcription factor activity    
HMMPanther PTHR12831 TRANSCRIPTION 1.6e-32 70-165
HMMPfam PF03850 Tfb4 7e-37 2-58
65-165
no_ID  
Seg seg seg NA 9-45