Jatropha Genome Database

JcCB0180631.10  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0180631
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q9ZRJ0_TOBAC 254 49.8 59.9 (tr|Q9ZRJ0) Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1
Arabidopsis_pep AT4G23160.1 105 33.0 49.7 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma11g04990.1 130 35.2 50.9  
Medicago_pep IMGA|CU179634_24.1 112 35.6 51.1 Polynucleotidyl transferase, Ribonuclease H fold CU179634.6 87152-89450 H EGN_Mt090430 20090702
grape_pep GSVIVT01010555001 72.0 47.8 62.7  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268519952|gb|FM889800.1|FM889800 505 91.5 91.5 FM889800 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0180631.10 length: 627 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 1.5e-32 463-553
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 4.4e-67 366-614
Seg seg seg NA 429-442