Jatropha Genome Database

JcCB0175111.10 (JcS_100527.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0175111
Scaffold:
JcS_100527 JcCB0188041(-) =JcCB0237301(-) =JcCB0175111(+) =JcCA0294301(+) =JcCB0487861(+) =JcCB0435511(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9T6A4_RICCO 130 59.3 76.3 (tr|B9T6A4) DNA binding protein, putative OS=Ricinus communis GN=RCOM_0140320 PE=4 SV=1
Arabidopsis_pep AT1G30670.1 93.2 50.0 67.8 | Symbols: | basic helix-loop-helix (bHLH) family protein | chr1:10879311-10880188 REVERSE
soybean_pep Glyma15g41400.1 90.9 79.2 86.8  
Medicago_pep IMGA|AC233682_19.1 125 55.6 71.8 Helix-loop-helix DNA-binding AC233682.2 73932-72796 H EGN_Mt090430 20090702
grape_pep GSVIVT01037927001 124 61.1 75.9  
castor_bean_cds 30169.m006312 85.7 90.1 90.1 hypothetical protein
castor_bean_pep 27996.m000153 130 59.3 76.3 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0175111.10 length: 129 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF00010 HLH 1.5e-06 12-56
HMMSmart SM00353 no description 5.1e-09 12-61
ProfileScan PS50888 HLH 9.952 3-56
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
superfamily SSF47459 HLH, 5.1e-09 19-78