Jatropha Genome Database

JcCB0171671.10 (JcS_100001.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0171671
Scaffold:
JcS_100001 JcCB0130751(-) =JcCA0312871(-) =JcCB0287701(+) =JcCB0171671(-) =JcCA0315721(-) =JcCB0186361(+) =JcCA0066941(+) =JcCA0264441(-) =JcPR10F8MCI(+) =JcCA0277701(-) =JcCB0465311(+) =JcCC0332622(+) =JcCB0455701(-) =JcCB0698151(+) =JcCB0545461(+) =JcCA0316711(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RTT5_RICCO 232 65.0 76.5 (tr|B9RTT5) Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0912620 PE=4 SV=1
Arabidopsis_pep AT1G03260.1 216 65.9 77.6 | Symbols: | LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins in 730 species: Archae - 8; Bacteria - 1831; Metazoa - 239; Fungi - 87; Plants - 162; Viruses - 0; Other Eukaryotes - 1105 (source: NCBI BLink). | chr1:795678-798102 REVERSE
soybean_pep Glyma13g27960.1 214 73.8 85.1  
Medicago_pep IMGA|Medtr4g033680.1 67.4 33.1 50.4 integral membrane protein, DedA family, related chr04_pseudomolecule_IMGAG_V3 8387727-8381821 E EGN_Mt090430 20090702
grape_pep GSVIVT01011108001 215 72.5 82.6  
castor_bean_cds 29844.m003306 60.0 87.1 87.1 conserved hypothetical protein
castor_bean_pep 29844.m003306 232 65.0 76.5 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c03927 117 79.8 79.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0171671.10 length: 219 aa.
IPR015414 SNARE associated Golgi protein
method AccNumber shortName E-value location
HMMPfam PF09335 SNARE_assoc 1.9e-25 103-216
no_ID  
HMMPanther PTHR12677 UNCHARACTERIZED 3.7e-39 18-216
Seg seg seg NA 11-16
51-56
173-183
206-217