Jatropha Genome Database

JcCB0155711.10 (JcS_108627.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0155711
Scaffold:
JcS_108627 JcCB0158591(-) =JcCB0155711(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RLK6_RICCO 362 68.3 74.9 (tr|B9RLK6) LIGULELESS1 protein, putative OS=Ricinus communis GN=RCOM_1468500 PE=4 SV=1
Arabidopsis_pep AT1G69170.1 158 55.7 67.9 | Symbols: | squamosa promoter-binding protein-like 6 (SPL6) | chr1:26005626-26007041 FORWARD
soybean_pep Glyma05g00200.1 254 50.9 62.9  
Medicago_pep IMGA|Medtr5g048960.1 174 38.9 53.2 SBP chr05_pseudomolecule_IMGAG_V3 20837686-20832720 E EGN_Mt090430 20090702
grape_pep GSVIVT01012247001 203 48.7 59.6  
castor_bean_cds 30138.m003942 456 82.5 82.5 LIGULELESS1 protein, putative
castor_bean_pep 30138.m003942 362 68.3 74.9 LIGULELESS1 protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c09752 50.1 96.6 96.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0155711.10 length: 281 aa.
IPR004333 Transcription factor, SBP-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Gene3D G3DSA:4.10.1100.10 no description 3.3e-25 172-231
HMMPfam PF03110 SBP 1.8e-40 177-252
ProfileScan PS51141 ZF_SBP 32.505 174-251
superfamily SSF103612 SBT 1e-40 174-259
no_ID  
Seg seg seg NA 103-126
148-160