Jatropha Genome Database

JcCB0144231.10 (JcS_107616.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0144231
Scaffold:
JcS_107616 JcCA0305581(-) =JcCB0144231(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5C8U0_VITVI 1063 73.5 87.2 (tr|A5C8U0) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018821 PE=4 SV=1
Arabidopsis_pep AT5G16860.1 950 64.8 80.0 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:5543834-5546386 FORWARD
soybean_pep Glyma14g39710.1 1038 71.9 84.4  
Medicago_pep IMGA|AC233668_41.1 871 63.2 75.9 Pentatricopeptide repeat AC233668.2 172839-167990 E EGN_Mt090430 20090702
grape_pep GSVIVT01010125001 527 38.6 60.9  
castor_bean_cds 29854.m001091 995 84.5 84.5 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29854.m001091 762 79.5 89.5 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0144231.10 length: 718 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.012 28-55
61-88
137-164
165-195
200-228
309-336
385-410
413-443
448-475
486-510
HMMTigr TIGR00756 PPR: 0.019 27-60
61-96
134-164
165-199
200-234
309-345
382-412
413-447
448-483
484-519
ProfileScan PS51375 PPR 7.728 59-89
25-55
163-197
132-162
198-232
307-341
274-304
411-445
380-410
446-481
482-512
548-582
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 0 22-718
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 0 22-718
superfamily SSF48452 TPR-like 5.1e-11 162-567
22-159