Jatropha Genome Database

JcCB0140741.10 (JcS_103910.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0140741
Scaffold:
JcS_103910 JcCB0105091(-) =JcCB0398431(+) =JcCB0140741(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RC20_RICCO 169 53.5 56.6 (tr|B9RC20) Dehydration-responsive element-binding protein 1B, putative OS=Ricinus communis GN=RCOM_1683780 PE=4 SV=1
Arabidopsis_pep AT5G52020.1 107 45.7 55.0 | Symbols: | AP2 domain-containing protein | chr5:21124192-21124890 REVERSE
soybean_pep Glyma05g03540.1 122 47.1 54.3  
Medicago_pep IMGA|Medtr1g129460.1 100 67.6 70.3 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 28924038-28925362 F EGN_Mt090430 20090702
grape_pep GSVIVT01010629001 111 68.8 72.7  
castor_bean_cds 30190.m011121 137 82.5 82.5 Dehydration-responsive element-binding protein 1B, putative
castor_bean_pep 30190.m011121 169 53.5 56.6 Dehydration-responsive element-binding protein 1B, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0140741.10 length: 211 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Gene3D G3DSA:3.30.730.10 no description 1.7e-19 65-125
HMMPfam PF00847 AP2 8.6e-14 66-114
HMMSmart SM00380 no description 6.2e-30 66-128
ProfileScan PS51032 AP2_ERF 20.099 66-122
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 3.4e-20 65-125
no_ID  
Seg seg seg NA 52-61
101-111
142-148