Jatropha Genome Database

JcCB0130701.10 (JcS_100270.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0130701
Scaffold:
JcS_100270 JcCB0130701(-) =JcCD0091855(-) =JcCB0155101(+) =JcCB0049611(+) =JcCA0075831(+) =JcCB0095651(+) =JcCA0309871(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RAM4_RICCO 505 90.4 93.4 (tr|B9RAM4) 26S proteasome non-atpase regulatory subunit, putative OS=Ricinus communis GN=RCOM_1507340 PE=4 SV=1
Arabidopsis_pep AT4G24820.2 452 80.7 89.3 | Symbols: | 26S proteasome regulatory subunit, putative (RPN7) | chr4:12790471-12792599 REVERSE
soybean_pep Glyma17g13640.1 466 84.6 90.1  
Medicago_pep IMGA|Medtr8g109840.1 439 81.2 87.8 Proteasome component region PCI chr08_pseudomolecule_IMGAG_V3 24729724-24726359 F EGN_Mt090430 20090702
grape_pep GSVIVT01007538001 491 88.6 91.9  
castor_bean_cds 30147.m013798 930 90.1 90.1 26S proteasome non-atpase regulatory subunit, putative
castor_bean_pep 30147.m013798 505 90.4 93.4 26S proteasome non-atpase regulatory subunit, putative
JAT_13201ests gi|268521656|gb|FM896864.1|FM896864 283 99.3 99.3 FM896864 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004274, mRNA sequence
KJC_r1 KJC_c02196 1620 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0130701.10 length: 272 aa.
IPR019585 26S proteasome, regulatory subunit Rpn7
method AccNumber shortName E-value location
HMMPfam PF10602 RPN7 5.4e-60 63-236
no_ID  
Coil coil coiled-coil NA 67-99
HMMPanther PTHR14145 26S 2.4e-129 39-272
HMMPanther PTHR14145:SF1 26S 2.4e-129 39-272
Seg seg seg NA 73-84