Jatropha Genome Database

JcCB0130451.10 (JcS_101984.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0130451
Scaffold:
JcS_101984 JcCB0130451(-) =JcCA0113151(-) =JcCB0181751(-) =JcCB0213041(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A5ALB5_VITVI 364 50.7 63.0 (tr|A5ALB5) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007430 PE=4 SV=1
Arabidopsis_pep AT4G23160.1 155 51.1 73.4 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma17g31360.1 238 41.1 61.5  
Medicago_pep IMGA|Medtr5g048830.1 163 58.2 70.9 Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H EGN_Mt090430 20090702
grape_pep GSVIVT01031724001 132 45.0 64.2  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268520222|gb|FM890070.1|FM890070 52.0 89.1 89.1 FM890070 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003862, mRNA sequence
KJC_r1 KJC_c04660 343 90.2 90.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0130451.10 length: 419 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 7.9e-45 136-244
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 8.6e-133 75-395
Seg seg seg NA 33-51
superfamily SSF56672 DNA/RNA 0.00037 135-230
280-403