Jatropha Genome Database

JcCB0129341.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0129341
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9S1E4_RICCO 820 62.0 68.0 (tr|B9S1E4) Auxin response factor, putative OS=Ricinus communis GN=RCOM_1657600 PE=4 SV=1
Arabidopsis_pep AT5G20730.2 215 53.4 63.4 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator | chr5:7016704-7021504 REVERSE
soybean_pep Glyma07g15640.1 649 52.0 61.3  
Medicago_pep IMGA|Medtr4g161090.1 460 52.4 63.5 Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation chr04_pseudomolecule_IMGAG_V3 41048269-41053932 E EGN_Mt090430 20090702
grape_pep GSVIVT01032251001 683 53.1 60.8  
castor_bean_cds 30185.m000956 1136 82.6 82.6 Auxin response factor, putative
castor_bean_pep 30185.m000956 820 62.0 68.0 Auxin response factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c07641 1051 99.8 99.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0129341.10 length: 727 aa.
IPR011525 Aux/IAA-ARF-dimerisation
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 25.333 616-698
no_ID  
HMMPfam PF02309 AUX_IAA 1e-18 619-704
Seg seg seg NA 66-96
150-162
167-197
208-241
300-308
456-462
473-484