Jatropha Genome Database

JcCB0124301.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0124301
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A9T4T1_PHYPA 313 91.2 96.6 (tr|A9T4T1) Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_168056 PE=4 SV=1
Arabidopsis_pep AT1G03840.1 308 93.8 97.9 | Symbols: MGP | MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding | chr1:967596-970058 REVERSE
soybean_pep Glyma06g44080.1 296 93.2 95.9  
Medicago_pep IMGA|Medtr1g099650.1 291 89.0 94.5 Zinc finger, C2H2-type chr01_pseudomolecule_IMGAG_V3 20449956-20453836 E EGN_Mt090430 20090702
grape_pep GSVIVT01020612001 304 95.9 98.6  
castor_bean_cds 29983.m003121 375 88.7 88.7 nucleic acid binding protein, putative
castor_bean_pep 30170.m014220 291 89.7 95.2 nucleic acid binding protein, putative
JAT_13201ests gi|268522602|gb|FM896643.1|FM896643 54.0 82.8 82.8 FM896643 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003913, mRNA sequence
KJC_r1 KJC_c06446 168 86.5 86.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0124301.10 length: 150 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 35-55
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.489 33-55
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 1.3e+02 33-55
109-129
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 1.5e-09 72-149
HMMPanther PTHR10593:SF10 UNCHARACTERIZED 1.5e-09 72-149
superfamily SSF57667 C2H2 5.2e-05 91-135
28-64