Jatropha Genome Database

JcCB0124191.10 (JcS_101735.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0124191
Scaffold:
JcS_101735 JcCA0285831(-) =JcCB0124191(+) =JcCB0220081(+) =JcCA0132221(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RZE4_RICCO 639 66.0 78.5 (tr|B9RZE4) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0938630 PE=4 SV=1
Arabidopsis_pep AT2G15980.1 476 48.9 69.5 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:6951349-6952845 REVERSE
soybean_pep Glyma11g13010.1 481 50.5 68.6  
Medicago_pep IMGA|Medtr4g089510.1 164 25.6 44.0 Pentatricopeptide repeat chr04_pseudomolecule_IMGAG_V3 18666066-18662138 E EGN_Mt090430 20090702
grape_pep GSVIVT01031896001 259 60.3 77.0  
castor_bean_cds 29851.m002466 301 79.0 79.0 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29851.m002466 639 66.0 78.5 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0124191.10 length: 479 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0087 239-268
273-303
309-337
343-372
382-401
415-444
HMMTigr TIGR00756 PPR: 4.7e-06 104-138
161-195
238-272
273-307
308-342
343-377
378-413
414-448
ProfileScan PS51375 PPR 6.862 102-136
159-193
236-270
271-305
306-340
341-375
376-411
412-446
447-479
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 4.2e-84 100-476
superfamily SSF48452 TPR-like 1e-16 160-467