Jatropha Genome Database

JcCB0123131.10 (JcS_100084.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0123131
Scaffold:
JcS_100084 JcCB0437881(+) =JcCB0123131(+) =JcCB0316661(+) =JcCA0294381(+) =JcCB0320341(+) =JcCA0226421(+) =JcCB0069681(+) =JcCA0308351(+) =JcCA0299751(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S6U9_RICCO 380 94.8 98.4 (tr|B9S6U9) Heterogeneous nuclear ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_0874330 PE=4 SV=1
Arabidopsis_pep AT5G66010.1 278 71.9 87.2 | Symbols: | RNA binding / nucleic acid binding / nucleotide binding | chr5:26399612-26400753 FORWARD
soybean_pep Glyma09g33090.1 352 86.1 94.8  
Medicago_pep IMGA|Medtr8g088030.1 350 85.5 93.8 H+-transporting two-sector ATPase, alpha/beta subunit, central region; RNA-binding region RNP-1 (RNA recognition motif) chr08_pseudomolecule_IMGAG_V3 18541212-18538957 F EGN_Mt090430 20090702
grape_pep GSVIVT01026647001 282 72.9 85.1  
castor_bean_cds 29830.m001447 712 90.5 90.5 heterogeneous nuclear ribonucleoprotein, putative
castor_bean_pep 29830.m001447 380 94.8 98.4 heterogeneous nuclear ribonucleoprotein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c04312 549 99.6 99.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0123131.10 length: 197 aa.
IPR000504 RNA recognition motif, RNP-1
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.8e-09 112-178
HMMSmart SM00360 no description 1.9e-08 109-181
ProfileScan PS50102 RRM 9.661 108-185
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1e-07 109-190
no_ID  
HMMPanther PTHR13976 HETEROGENEOUS 1.5e-37 2-197
HMMPanther PTHR13976:SF3 HETEROGENEOUS 1.5e-37 2-197
superfamily SSF54928 RNA-binding 3.6e-17 8-186