Jatropha Genome Database

JcCB0121611.20 (JcS_101597.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0121611
Scaffold:
JcS_101597 JcCA0180531(-) =JcCA0291241(-) =JcCB0121611(+) =JcCA0042501(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HBW1_POPTR 546 72.8 86.2 (tr|B9HBW1) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_763046 PE=4 SV=1
Arabidopsis_pep AT5G37570.1 471 61.5 77.8 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:14924494-14926146 REVERSE
soybean_pep Glyma03g34150.1 506 66.7 83.1  
Medicago_pep IMGA|AC234702_5.1 328 44.4 66.8 Pentatricopeptide repeat AC234702.1 42306-44804 E EGN_Mt090430 20090702
grape_pep GSVIVT01033906001 490 65.2 79.8  
castor_bean_cds 30032.m000454 404 82.2 82.2 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30032.m000454 409 79.3 89.2 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0121611.20 length: 356 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0029 17-45
47-72
79-107
153-178
180-210
216-243
253-277
HMMTigr TIGR00756 PPR: 0.078 16-46
47-77
78-112
180-214
215-250
251-285
ProfileScan PS51375 PPR 6.939 14-48
76-110
49-75
178-212
147-177
111-145
249-283
213-243
315-349
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 7.4e-159 1-356
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 7.4e-159 1-356
superfamily SSF48452 TPR-like 1.6e-29 11-320