Jatropha Genome Database

JcCB0111501.20 (JcS_100291.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0111501
Scaffold:
JcS_100291 JcCB0308331(+) =JcCA0310551(+) =JcCB0111501(+) =JcCB0379211(-) =JcCD0126540(+) =JcCB0011311(+) =JcCB0234411(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9H0P9_POPTR 286 93.1 100.0 (tr|B9H0P9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_818088 PE=4 SV=1
Arabidopsis_pep AT4G34450.1 276 89.7 96.6 | Symbols: | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD
soybean_pep Glyma12g04820.1 285 93.8 98.6  
Medicago_pep IMGA|Medtr3g159510.1 281 92.4 97.2 Adaptin, N-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; ; chr03_pseudomolecule_IMGAG_V3 41757228-41747971 E EGN_Mt090430 20090702
grape_pep GSVIVT01031955001 267 94.5 99.3  
castor_bean_cds 30190.m010889 549 90.6 90.6 coatomer gamma subunit, putative
castor_bean_pep 30190.m010889 255 90.3 97.9 coatomer gamma subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00851 874 99.8 99.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0111501.20 length: 150 aa.
IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
HMMPfam PF01602 Adaptin_N 3.3e-24 27-147
IPR011989 Armadillo-like helical
Molecular Function GO:0005488 binding    
Gene3D G3DSA:1.25.10.10 no description 6.1e-25 15-149
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 9.9e-20 18-149
no_ID  
HMMPanther PTHR10261 COATOMER 1.8e-81 14-149