Jatropha Genome Database

JcCB0107751.20  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0107751
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9H208_POPTR 198 98.9 100.0 (tr|B9H208) Predicted protein OS=Populus trichocarpa GN=MYB017 PE=4 SV=1
Arabidopsis_pep AT4G21440.1 189 93.2 96.6 | Symbols: ATMYB102, ATM4 | ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor | chr4:11418425-11419652 REVERSE
soybean_pep Glyma13g32090.1 190 98.9 98.9  
Medicago_pep IMGA|Medtr4g124700.1 181 94.4 96.6 N-6 Adenine-specific DNA methylase; Homeodomain-like; chr04_pseudomolecule_IMGAG_V3 29249973-29248640 H EGN_Mt090430 20090702
grape_pep GSVIVT01003662001 189 97.7 100.0  
castor_bean_cds 29933.m001439 293 90.7 90.7 r2r3-myb transcription factor, putative
castor_bean_pep 29933.m001439 198 98.9 98.9 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0107751.20 length: 88 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 4.9e-14 13-63
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 5.5e-24 14-83
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 5.4e-17 12-64
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 6.7e-18 14-61
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 1.2e-70 3-88
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 7.173 9-65
66-88
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 1.2e-70 3-88