Jatropha Genome Database

JcCB0106211.10 (JcS_101315.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0106211
Scaffold:
JcS_101315 JcCB0586831(+) =JcCA0148271(+) =JcCB0106211(+) =JcCB0880531(+) =JcCB0549901(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T2X9_RICCO 410 86.0 95.0 (tr|B9T2X9) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0158910 PE=4 SV=1
Arabidopsis_pep AT3G59040.2 373 77.8 91.4 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:21821495-21823919 REVERSE
soybean_pep Glyma10g43150.1 369 78.3 89.6  
Medicago_pep IMGA|Medtr1g143580.1 378 80.1 90.5 Pentatricopeptide repeat chr01_pseudomolecule_IMGAG_V3 31747847-31742900 E EGN_Mt090430 20090702
grape_pep GSVIVT01020809001 381 79.6 91.0  
castor_bean_cds 28094.m000179 662 88.1 88.1 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 28094.m000179 410 86.0 95.0 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c05513 494 98.2 98.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0106211.10 length: 221 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 2.7e-07 21-45
51-80
125-152
159-186
191-221
HMMTigr TIGR00756 PPR: 0.0031 16-50
51-85
86-120
124-158
159-190
191-219
ProfileScan PS51375 PPR 12.112 49-83
14-48
122-156
84-118
189-221
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 2.1e-51 1-221
superfamily SSF48452 TPR-like 2.4e-18 19-219