Jatropha Genome Database

JcCB0105091.10 (JcS_103910.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0105091
Scaffold:
JcS_103910 JcCB0105091(-) =JcCB0398431(+) =JcCB0140741(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RC19_RICCO 290 65.5 74.5 (tr|B9RC19) Dehydration-responsive element-binding protein 1F, putative OS=Ricinus communis GN=RCOM_1683570 PE=4 SV=1
Arabidopsis_pep AT4G25470.1 178 49.7 63.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | CBF2 (C-REPEAT/DRE BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor | chr4:13015436-13016086 REVERSE
soybean_pep Glyma01g42500.2 191 51.0 66.5  
Medicago_pep IMGA|Medtr5g011090.1 180 48.9 62.0 Pathogenesis-related transcriptional factor and ERF chr05_pseudomolecule_IMGAG_V3 2908196-2909983 E EGN_Mt090430 20090702
grape_pep GSVIVT01019860001 201 54.7 65.7  
castor_bean_cds 30190.m011120 147 81.5 81.5 Dehydration-responsive element-binding protein 1F, putative
castor_bean_pep 30190.m011120 290 65.5 74.5 Dehydration-responsive element-binding protein 1F, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0105091.10 length: 227 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.2e-06 60-71
82-98
Gene3D G3DSA:3.30.730.10 no description 2.7e-20 58-119
HMMPfam PF00847 AP2 3.8e-14 59-108
HMMSmart SM00380 no description 4.9e-29 59-122
ProfileScan PS51032 AP2_ERF 21.035 59-116
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 5.8e-22 58-119
no_ID  
Seg seg seg NA 95-107