Jatropha Genome Database

JcCB0102421.20 (JcS_100106.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0102421
Scaffold:
JcS_100106 JcCD0118264(-) =JcCB0444931(-) =JcCB0370211(-) =JcPR03EEYGU(+) =JcCD0063834(-) =JcCD0062083(-) =JcCB0102421(+) =JcCB0365891(-) =JcCB0472031(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RDM7_RICCO 337 69.4 79.2 (tr|B9RDM7) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1614490 PE=4 SV=1
Arabidopsis_pep AT3G42630.1 164 44.0 66.8 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:14722314-14723635 FORWARD
soybean_pep Glyma03g04350.1 194 49.7 67.7  
Medicago_pep IMGA|Medtr5g076940.1 148 49.0 67.8 Pentatricopeptide repeat chr05_pseudomolecule_IMGAG_V3 28252495-28253477 E EGN_Mt090430 20090702
grape_pep GSVIVT01032259001 304 61.2 77.6  
castor_bean_cds 30174.m008985 327 83.7 83.7 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30174.m008985 337 69.4 79.2 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0102421.20 length: 246 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.043 59-84
91-116
130-150
161-190
HMMTigr TIGR00756 PPR: 0.49 55-89
90-124
160-194
195-229
ProfileScan PS51375 PPR 5.546 53-87
88-122
123-157
158-192
193-227
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 2.8e-27 39-242