Jatropha Genome Database

JcCB0100471.10 (JcS_100262.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0100471
Scaffold:
JcS_100262 JcPR04HOIK0(+) =JcCB0100471(-) =JcCB0357161(-) =JcCA0296871(-) =JcCB0152061(+) =JcCB0013651(+) =JcCB0242781(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RXF1_RICCO 144 97.0 98.5 (tr|B9RXF1) Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_0903280 PE=3 SV=1
Arabidopsis_pep AT1G62360.1 128 89.9 94.2 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT MERISTEMLESS); transcription factor | chr1:23058796-23061722 REVERSE
soybean_pep Glyma15g11850.1 133 89.6 95.5  
Medicago_pep IMGA|Medtr5g093180.1 111 79.1 85.1 ELK; KNOX1; KNOX2; Homeodomain-related chr05_pseudomolecule_IMGAG_V3 36623468-36619750 F EGN_Mt090430 20090702
grape_pep GSVIVT01004811001 140 95.6 98.5  
castor_bean_cds 29842.m003531 204 88.5 88.5 homeobox protein knotted-1, putative
castor_bean_pep 29842.m003531 144 97.0 98.5 homeobox protein knotted-1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0100471.10 length: 71 aa.
IPR001356 Homeobox
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00046 Homeobox 2e-05 6-33
ProfileScan PS50071 HOMEOBOX_2 10.042 1-36
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 2.6e-08 5-51
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 6.4e-07 5-47
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0030528 transcription regulator activity    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 11-34
no_ID  
HMMPanther PTHR11850 HOMEOBOX 9.9e-30 5-66
HMMPanther PTHR11850:SF15 HOMEOBOX 9.9e-30 5-66