Jatropha Genome Database

JcCB0100231.10 (JcS_109995.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0100231
Scaffold:
JcS_109995 JcCB0403471(+) =JcCB0100231(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9REI7_RICCO 540 67.1 76.4 (tr|B9REI7) DNA binding protein, putative OS=Ricinus communis GN=RCOM_1771650 PE=4 SV=1
Arabidopsis_pep AT2G44430.1 231 39.8 53.1 | Symbols: | DNA-binding bromodomain-containing protein | chr2:18333603-18336165 FORWARD
soybean_pep Glyma15g42440.1 248 40.6 52.2  
Medicago_pep IMGA|Medtr2g071430.1 193 45.7 58.2 Bromodomain chr02_pseudomolecule_IMGAG_V3 16418495-16417039 E EGN_Mt090430 20090702
grape_pep GSVIVT01001371001 289 51.0 67.9  
castor_bean_cds 30226.m001997 426 80.3 80.3 DNA binding protein, putative
castor_bean_pep 30226.m001997 540 67.1 76.4 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0100231.10 length: 489 aa.
IPR001487 Bromodomain
method AccNumber shortName E-value location
Gene3D G3DSA:1.20.920.10 no description 5.8e-11 140-244
HMMPfam PF00439 Bromodomain 8.2e-11 142-220
HMMSmart SM00297 no description 9e-14 129-238
ProfileScan PS50014 BROMODOMAIN_2 11.215 148-219
superfamily SSF47370 Bromodomain 4.8e-16 111-241
no_ID  
Seg seg seg NA 43-59
113-122