Jatropha Genome Database

JcCB0098751.10 (JcS_105753.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0098751
Scaffold:
JcS_105753 JcCB0098751(+) =JcCB0130221(-) =JcCA0281241(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q9AU17_SOLCI 1163 54.5 70.0 (tr|Q9AU17) Polyprotein-like OS=Solanum chilense PE=4 SV=1
Arabidopsis_pep AT4G23160.1 219 36.3 56.2 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma10g21320.1 568 36.3 53.8  
Medicago_pep IMGA|Medtr5g072700.1 351 29.2 46.0 Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H EGN_Mt090430 20090702
grape_pep GSVIVT01028612001 305 32.1 48.5  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268516533|gb|FM889693.1|FM889693 714 91.6 91.6 FM889693 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003410, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0098751.10 length: 1304 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 1.1e-32 467-584
ProfileScan PS50994 INTEGRASE 23.845 465-630
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00098 zf-CCHC 1.3e-05 221-237
HMMSmart SM00343 no description 0.00075 222-238
ProfileScan PS50158 ZF_CCHC 10.741 221-237
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 3.9e-42 461-630
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
HMMPfam PF07727 RVT_2 2e-100 828-1074
no_ID  
Gene3D G3DSA:3.30.420.10 no description 1e-30 488-611
HMMPanther PTHR11439 GAG-POL-RELATED 0 213-1131
Seg seg seg NA 173-183
superfamily SSF56672 DNA/RNA 2.8e-14 827-1019
superfamily SSF57756 Retrovirus 6.1e-06 209-250