Jatropha Genome Database

JcCB0095251.10 (JcS_100624.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0095251
Scaffold:
JcS_100624 JcCB0479101(+) =JcCA0020472(-) =JcCB0175201(-) =JcCA0225051(-) =JcCB0095251(+) =JcCA0020761(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RFF6_RICCO 777 66.3 71.8 (tr|B9RFF6) Eukaryotic translation initiation factor 3 subunit, putative OS=Ricinus communis GN=RCOM_1434190 PE=4 SV=1
Arabidopsis_pep AT4G11420.1 556 63.6 78.7 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A); translation initiation factor | chr4:6947834-6952053 REVERSE
soybean_pep Glyma03g32950.2 517 62.9 75.7  
Medicago_pep IMGA|Medtr7g118360.1 555 52.2 63.1 Proteasome component region PCI chr07_pseudomolecule_IMGAG_V3 27920590-27913718 E EGN_Mt090430 20090702
grape_pep GSVIVT01031192001 619 71.3 80.3  
castor_bean_cds 30128.m008874 751 88.4 88.4 Eukaryotic translation initiation factor 3 subunit, putative
castor_bean_pep 30128.m008874 777 66.3 71.8 Eukaryotic translation initiation factor 3 subunit, putative
JAT_13201ests gi|268524943|gb|FM896573.1|FM896573 708 98.1 98.1 FM896573 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003820, mRNA sequence
KJC_r1 KJC_c00774 1451 99.9 99.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0095251.10 length: 668 aa.
IPR000717 Proteasome component (PCI) domain
method AccNumber shortName E-value location
HMMPfam PF01399 PCI 2.1e-18 34-169
HMMSmart SM00088 no description 5.2e-05 101-192
no_ID  
Coil coil coiled-coil NA 221-303
328-359
458-519
HMMPanther PTHR14005 EUKARYOTIC 2.1e-123 13-655
Seg seg seg NA 232-258
278-297
461-494
499-521
544-568
652-668