Jatropha Genome Database

JcCB0089711.20 (JcS_103661.20)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0089711
Scaffold:
JcS_103661 JcCA0068741(+) =JcCB0089711(-) =JcCB0287851(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q6L3Y5_SOLDE 278 47.6 69.0 (tr|Q6L3Y5) Gag-pol polyprotein, putative OS=Solanum demissum GN=SDM1_46t00012 PE=4 SV=2
Arabidopsis_pep AT3G21000.1 55.5 22.9 43.3 | Symbols: | unknown protein | chr3:7363921-7365138 FORWARD
soybean_pep Glyma15g17820.1 246 43.5 61.0  
Medicago_pep IMGA|Medtr8g074430.1 74.7 26.2 51.4 integrase, related chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H EGN_Mt090430 20090702
grape_pep GSVIVT01037631001 248 43.9 62.7  
castor_bean_cds --No_Hits--        
castor_bean_pep 30190.m011080 98.6 46.7 64.1 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0089711.20 length: 277 aa.
IPR001878 Zinc finger, CCHC-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00098 zf-CCHC 7e-06 251-266
HMMSmart SM00343 no description 0.0017 230-246
251-267
ProfileScan PS50158 ZF_CCHC 9.603 252-266
no_ID  
Coil coil coiled-coil NA 187-208
superfamily SSF57756 Retrovirus 9.9e-07 217-271