Jatropha Genome Database

JcCB0088201.20 (JcS_101502.20)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0088201
Scaffold:
JcS_101502 JcCA0102601(+) =JcCB0632131(-) =JcCB0088201(+) =JcCB0030731(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A2Q168_MEDTR 167 40.8 53.6 (tr|A2Q168) RNA-directed DNA polymerase (Reverse transcriptase) (Fragment) OS=Medicago truncatula GN=MtrDRAFT_AC148290g28v2 PE=4 SV=1
Arabidopsis_pep --No_Hits--        
soybean_pep Glyma06g25360.1 119 35.4 51.9  
Medicago_pep IMGA|Medtr5g088260.1 128 40.2 56.3 RNA-directed DNA polymerase (Reverse transcriptase) chr05_pseudomolecule_IMGAG_V3 34193929-34195112 H EGN_Mt090430 20090702
grape_pep --No_Hits--        
castor_bean_cds --No_Hits--        
castor_bean_pep 48288.m000018 84.7 38.6 60.5 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0088201.20 length: 746 aa.
IPR000477 RNA-directed DNA polymerase (reverse transcriptase)
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003964 RNA-directed DNA polymerase activity    
Biological Process GO:0006278 RNA-dependent DNA replication    
HMMPfam PF00078 RVT_1 2.1e-13 117-296
IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
HMMPanther PTHR19446 REVERSE 1.3e-66 71-430
no_ID  
HMMPanther PTHR19446:SF34 NON-LTR 1.3e-66 71-430
Seg seg seg NA 372-388