Jatropha Genome Database

JcCB0088201.10 (JcS_101502.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0088201
Scaffold:
JcS_101502 JcCA0102601(+) =JcCB0632131(-) =JcCB0088201(+) =JcCB0030731(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B6REK6_9BRAS 331 73.8 86.7 (tr|B6REK6) Copia-like pol polyprotein OS=Boechera divaricarpa PE=4 SV=1
Arabidopsis_pep AT4G23160.1 190 44.2 61.1 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma11g04990.1 288 66.5 79.1  
Medicago_pep IMGA|CU179634_24.1 174 44.6 59.5 Polynucleotidyl transferase, Ribonuclease H fold CU179634.6 87152-89450 H EGN_Mt090430 20090702
grape_pep GSVIVT01009548001 183 53.3 70.4  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0088201.10 length: 560 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 6.9e-65 85-230
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 6.1e-123 1-553
Seg seg seg NA 4-21
superfamily SSF56672 DNA/RNA 3.2e-10 83-227