Jatropha Genome Database

JcCB0084921.10 (JcS_101083.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0084921
Scaffold:
JcS_101083 JcCB0190921(-) =JcCB0084921(-) =JcCB0476701(-) =JcCB0126381(+) =JcCB0004761(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9N1Y3_POPTR 627 85.3 91.9 (tr|B9N1Y3) Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_266088 PE=4 SV=1
Arabidopsis_pep AT5G38530.1 582 77.5 86.5 | Symbols: | tryptophan synthase-related | chr5:15424097-15426294 FORWARD
soybean_pep Glyma13g07130.1 587 78.6 89.9  
Medicago_pep IMGA|Medtr3g064270.1 100 30.6 43.1 Pyridoxal-5-phosphate-dependent enzyme, beta subunit chr03_pseudomolecule_IMGAG_V3 14514672-14518997 E EGN_Mt090430 20090702
grape_pep GSVIVT01036477001 576 79.0 88.9  
castor_bean_cds 29980.m000183 424 85.8 85.8 tryptophan synthase beta chain, putative
castor_bean_pep 29980.m000183 295 76.6 84.2 tryptophan synthase beta chain, putative
JAT_13201ests gi|268522962|gb|FM896405.1|FM896405 773 99.7 99.7 FM896405 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003621, mRNA sequence
KJC_r1 KJC_c05194 1905 99.9 99.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0084921.10 length: 386 aa.
IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
HMMPfam PF00291 PALP 4.8e-29 103-343
superfamily SSF53686 Tryptophan 6.3e-79 53-363
IPR006653 Tryptophan synthase, beta chain, conserved site
Molecular Function GO:0004834 tryptophan synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
PatternScan PS00168 TRP_SYNTHASE_BETA NA 132-146
no_ID  
Gene3D G3DSA:3.40.50.1100 no description 5.5e-37 88-234
HMMPanther PTHR10314 SER/THR 9.5e-76 67-360
HMMPanther PTHR10314:SF3 TRYPTOPHAN 9.5e-76 67-360
Seg seg seg NA 51-62