Jatropha Genome Database

JcCB0078701.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0078701
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RQH3_RICCO 272 65.4 71.1 (tr|B9RQH3) Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_1491630 PE=4 SV=1
Arabidopsis_pep AT5G11590.1 191 55.0 60.7 | Symbols: TINY2 | TINY2 (TINY2); DNA binding / transcription factor | chr5:3727789-3728499 REVERSE
soybean_pep Glyma08g21650.1 193 53.1 61.1  
Medicago_pep IMGA|Medtr2g122400.1 185 56.2 66.5 Pathogenesis-related transcriptional factor and ERF chr02_pseudomolecule_IMGAG_V3 29365418-29364739 E EGN_Mt090430 20090702
grape_pep GSVIVT01018226001 142 66.3 83.7  
castor_bean_cds 30146.m003535 226 85.4 85.4 Transcriptional factor TINY, putative
castor_bean_pep 30146.m003535 272 65.4 71.1 Transcriptional factor TINY, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0078701.10 length: 245 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 8.7e-11 58-69
80-96
Gene3D G3DSA:3.30.730.10 no description 2.9e-23 56-117
HMMPfam PF00847 AP2 6.8e-16 56-106
HMMSmart SM00380 no description 1e-35 57-120
ProfileScan PS51032 AP2_ERF 23.275 57-114
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 5.9e-23 56-117
no_ID  
Seg seg seg NA 2-22
146-183