Jatropha Genome Database

JcCB0074501.20 (JcS_100386.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0074501
Scaffold:
JcS_100386 JcCD0203831(+) =JcPR04GQDJ3(-) =JcCB0574741(+) =JcCB0074501(+) =JcCA0152731(+) =JcCA0146281(-) =JcCB0589691(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl D3XFF8_THECC 96.7 93.3 100.0 (tr|D3XFF8) TT2 like MYB transcriptoin factor OS=Theobroma cacao GN=MYBPA PE=2 SV=1
Arabidopsis_pep AT3G23250.1 77.0 66.7 80.0 | Symbols: MYB15, ATY19, ATMYB15 | MYB15 (MYB DOMAIN PROTEIN 15); DNA binding / transcription factor | chr3:8309492-8310624 FORWARD
soybean_pep Glyma19g44660.1 92.0 88.9 91.1  
Medicago_pep IMGA|Medtr6g013190.1 73.9 66.7 77.8 Homeodomain-like; chr06_pseudomolecule_IMGAG_V3 2721503-2724011 E EGN_Mt090430 20090702
grape_pep GSVIVT01027182001 91.3 91.1 93.3  
castor_bean_cds 30068.m002544 75.8 82.1 82.1 r2r3-myb transcription factor, putative
castor_bean_pep 30068.m002544 90.1 88.9 93.3 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0074501.20 length: 64 aa.
IPR009057 Homeodomain-like
method AccNumber shortName E-value location
superfamily SSF46689 Homeodomain-like 3.9e-07 7-45
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 0.00064 12-46
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 3.3e-08 14-45
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 5e-20 3-45
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 9.974 9-64
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 5e-20 3-45
Seg seg seg NA 47-61