Jatropha Genome Database

JcCB0070851.10 (JcS_102606.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0070851
Scaffold:
JcS_102606 JcCB0075081(+) =JcCB0070851(+) =JcCA0302361(+) =JcCB0100311(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9MZU0_POPTR 191 75.8 87.5 (tr|B9MZU0) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_595585 PE=4 SV=1
Arabidopsis_pep AT3G05250.1 153 58.9 76.8 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:1495635-1497387 FORWARD
soybean_pep Glyma10g29650.1 178 73.1 82.4  
Medicago_pep IMGA|Medtr1g099360.1 154 61.9 73.8 Zinc finger, RING-type chr01_pseudomolecule_IMGAG_V3 20287188-20289387 E EGN_Mt090430 20090702
grape_pep GSVIVT01000035001 179 69.0 81.9  
castor_bean_cds 30128.m008758 238 84.5 84.5 protein binding protein, putative
castor_bean_pep 30128.m008758 184 78.4 86.5 protein binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0070851.10 length: 128 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 no description 3.6e-05 21-69
ProfileScan PS50089 ZF_RING_2 12.061 21-70
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 37-46
IPR018957 Zinc finger, C3HC4 RING-type
HMMPfam PF00097 zf-C3HC4 7.3e-09 21-69
no_ID  
Gene3D G3DSA:3.30.40.10 no description 4.4e-09 14-91
HMMPanther PTHR12456 TOPOISOMERASE 2.8e-41 17-128
HMMPanther PTHR12456:SF2 RING-FINGER 2.8e-41 17-128
superfamily SSF57850 RING/U-box 5.8e-11 14-80