Jatropha Genome Database

JcCB0070021.10 (JcS_111299.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0070021
Scaffold:
JcS_111299 JcCB0070021(-) =JcCB0010841(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A3BLD1_ORYSJ 255 37.8 55.5 (tr|A3BLD1) Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_24816 PE=4 SV=1
Arabidopsis_pep AT4G29090.1 184 30.4 50.1 | Symbols: | reverse transcriptase, putative / RNA-dependent DNA polymerase, putative | chr4:14333528-14335255 FORWARD
soybean_pep Glyma04g39800.2 152 28.3 49.4  
Medicago_pep IMGA|Medtr2g117110.1 233 40.0 59.0 RNA-directed DNA polymerase (Reverse transcriptase); Hemopexin; Polynucleotidyl transferase, Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3 27457173-27452820 H EGN_Mt090430 20090702
grape_pep GSVIVT01004252001 119 28.5 45.3  
castor_bean_cds --No_Hits--        
castor_bean_pep 30068.m002537 172 32.9 49.5 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0070021.10 length: 570 aa.
IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
method AccNumber shortName E-value location
HMMPanther PTHR19446 REVERSE 8.6e-89 1-338
no_ID  
HMMPanther PTHR19446:SF34 NON-LTR 8.6e-89 1-338
Seg seg seg NA 540-555